Group publications

 

Publikationer rss feed

2019
 

Asp271 is critical for substrate interaction with the surface binding site in β-agarase A from Zobellia galactanivorans

Wilkens, Casper ; Tiwari, Manish K. ; Webb, Helen ; Jam, Murielle ; Czjzek, Mirjam ; Svensson, Birte
in: Proteins: Structure, Function, and Bioinformatics, vol: 87, issue: 1, pages: 34-40

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1002/prot.25614

 

The exopolysaccharide properties and structures database: EPS-DB. Application to bacterial exopolysaccharides

Birch, Johnny ; Van Calsteren, Marie-Rose ; Pérez, Serge ; Svensson, Birte
in: Carbohydrate Polymers, vol: 205, pages: 565-570

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1016/j.carbpol.2018.10.063

2018
 

An NAD+-dependent sirtuin depropionylase and deacetylase (Sir2La) from the probiotic bacterium Lactobacillus acidophilus NCFM

Olesen, Sita V. ; Rajabi, Nima ; Svensson, Birte ; Olsen, Christian A. ; Madsen, Andreas S.
in: Biochemistry, vol: 57, issue: 26, pages: 3903-3915

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1021/acs.biochem.8b00306

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Dietary Nutrients, Proteomes, and Adhesion of Probiotic Lactobacilli to Mucin and Host Epithelial Cells

Celebioglu, Hasan Ufuk ; Svensson, Birte
in: Microorganisms, vol: 6, issue: 3

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.3390/microorganisms6030090

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Differential bacterial capture and transport preferences facilitate co-growth on dietary xylan in the human gut

Leth, Maria Louise ; Ejby, Morten ; Workman, Christopher ; Ewald, David Adrian ; Pedersen, Signe Schultz ; Sternberg, Claus ; Bahl, Martin Iain ; Licht, Tine Rask ; Aachmann, Finn Lillelund ; Westereng, Bjørge ; Abou Hachem, Maher
in: Nature Microbiology

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1038/s41564-018-0132-8

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Effect of alginate size, mannuronic/guluronic acid content and pH on particle size, thermodynamics and composition of complexes with β-lactoglobulin

Stender, Emil G.P. ; Khan, Sanaullah ; Ipsen, Richard ; Madsen, Finn ; Hägglund, Per ; Hachem, Maher Abou ; Almdal, Kristoffer ; Westh, Peter ; Svensson, Birte
in: Food Hydrocolloids, vol: 75, pages: 157-163

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.foodhyd.2017.09.001

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Functional Roles of Starch Binding Domains and Surface Binding Sites in Enzymes Involved in Starch Biosynthesis

Wilkens, Casper ; Svensson, Birte ; Møller, Marie Sofie
in: Frontiers in Plant Science, vol: 9

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.3389/fpls.2018.01652

 

High-Throughput In Vitro Screening for Inhibitors of Cereal α-Glucosidase

Rugen, Michael D ; Rejzek, Martin ; Næsted, Henrik ; Svensson, Birte ; Field, Robert A
part of: Plant Chemical Genomics - Methods and Protocols, pages: 101-115, 2018, Springer

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1007/978-1-4939-7874-8_9

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Interaction between structurally different heteroexopolysaccharides and β-lactoglobulin studied by solution scattering and analytical ultracentrifugation

Khan, Sanaullah ; Birch, Johnny ; Van Calsteren, Marie-Rose ; Ipsen, Richard ; Peters, Günther H.J. ; Svensson, Birte ; Harris, Pernille ; Almdal, Kristoffer
in: International Journal of Biological Macromolecules, vol: 111, pages: 746-754

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1016/j.ijbiomac.2018.01.050

 

Isoenergic modification of whey protein structure by denaturation and crosslinking using transglutaminase

Stender, Emil G. P. ; Koutina, Glykeria ; Almdal, Kristoffer ; Hassenkam, Tue ; Mackie, Alan ; Ipsen, Richard ; Svensson, Birte
in: Food & Function, vol: 9, issue: 2, pages: 797-805

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1039/c7fo01451a

 

Mass-Spectrometry-Based Identification of Cross-Links in Proteins Exposed to Photo-Oxidation and Peroxyl Radicals Using O-18 Labeling and Optimized Tandem Mass Spectrometry Fragmentation

Mariotti, Michele ; Leinisch, Fabian ; Leeming, Diana Julie ; Svensson, Birte ; Davies, Michael J. ; Hägglund, Per
in: Journal of Proteome Research, vol: 17, issue: 6, pages: 2017-2027

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1021/acs.jproteome.7b00881

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New Insights into the Potential of Endogenous Redox Systems in Wheat Bread Dough

Navrot, Nicolas ; Buhl Holstborg, Rikke ; Hägglund, Per ; Povlsen, Inge Lise ; Svensson, Birte
in: Antioxidants, vol: 7, issue: 12

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.3390/antiox7120190

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Plant Polyphenols Stimulate Adhesion to Intestinal Mucosa and Induce Proteome Changes in the Probiotic Lactobacillus acidophilus NCFM

Celebioglu, Hasan Ufuk ; Delsoglio, Marta ; Brix, Susanne ; Pessione, Enrica ; Svensson, Birte
in: Molecular Nutrition & Food Research, vol: 62, issue: 4

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1002/mnfr.201700638

 

Plasma membrane proteome analysis identifies a role of barley membrane steroid binding protein in root architecture response to salinity

Witzel, Katja ; Matros, Andrea ; Moller, Anders L. B. ; Ramireddy, Eswarayya ; Finnie, Christine ; Peukert, Manuela ; Rutten, Twan ; Herzog, Andreas ; Kunze, Gotthard ; Melzer, Michael ; Kaspar-Schoenefeld, Stephanie ; Schmuelling, Thomas ; Svensson, Birte ; Mock, Hans-Peter
in: Plant, Cell and Environment, vol: 41, issue: 6, pages: 1311-1330

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1111/pce.13154

 

Revealing the Dimeric Crystal and Solution Structure of β-Lactoglobulin at pH 4 and Its pH and Salt Dependent Monomer–Dimer Equilibrium

Khan, Sanaullah ; Ipsen, Richard ; Almdal, Kristoffer ; Svensson, Birte ; Harris, Pernille
in: Biomacromolecules, vol: 19, pages: 2905-2912

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1021/acs.biomac.8b00471

 

1H, 13C and 15N backbone and side-chain assignment of a carbohydrate binding module from a xylanase from Roseburia intestinalis

Madland, Eva ; Kitaoku, Yoshihito ; Sætrom, Gerd Inger ; Leth, Maria Louise ; Ejby, Morten ; Abou Hachem, Maher ; Aachmann, Finn Lillelund
in: Biomolecular N M R Assignments

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2018     |    DOI: https://doi.org/10.1007/s12104-018-9850-3

 

Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

Abbott, Wade ; Alber, Orly ; bayer, Ed ; Berrin, Jean-Guy ; Boraston, Alisdair ; Brumer, Harry ; Brzezinski, Ryszard ; Clarke, Anthony ; Cobucci-Ponzano, Beatrice ; Cockburn, Darrell ; Coutinho, Pedro ; Czjzek, Mirjam ; Dassa, Bareket ; Davies, Gideon John ; Eijsink, Vincent ; Eklöf, Jens ; Felice, Alfons ; Ficko-Blean, Elisabeth ; Fincher, Geoff ; Fontaine, Thierry ; Fujimoto, Zui ; Fujita, Kiyotaka ; Fushinobu, Shinya ; Gilbert, Harry ; Gloster, Tracey ; Goddard-Borger, Ethan ; Greig, Ian ; Hehemann, Jan-Hendrik ; Hemsworth, Glyn ; Henrissat, Bernard ; Hidaka, Masafumi ; Hurtado-Guerrero, Ramon ; Igarashi, Kiyohiko ; Ishida, Takuya ; Janeček, Štefan ; Jongkees, Seino ; Juge, Nathalie ; Kaneko, Satoshi ; Katayama, Takane ; Kitaoka, Motomitsu ; Konno, Naotake ; Kracher, Daniel ; Kulminskaya, Anna ; Lammerts van Bueren, Alicia ; Larsen, Stine ; Lee, Junho ; Linder, Markus ; Lo Leggio, Leila ; Ludwig, Roland ; Luis, Ana ; Maksimainen, Mirko ; Mark, Brian ; McLean, Richard ; Michel, Gurvan ; Montanier, Cedric ; Moracci, Marco ; Mori, Haruhide ; Nakai, Hiroyuki ; Nerinckx, Wim ; Ohnuma, Takayuki ; Pickersgill, Richard ; Piens, Kathleen ; Pons, Tirso ; Rebuffet, Etienne ; Reilly, Peter ; Remaud-Simeon, Magali ; Rempel, Brian ; Robinson, Kyle ; Rose, David ; Rouvinen, Juha ; Saburi, Wataru ; Sakamoto, Yuichi ; Sandgren, Mats ; Shaikh, Fathima ; Shoham, Yuval ; St. John, Franz ; Stahlberg, Jerry ; Suits, Michael ; Sulzenbacher, Gerlind ; Sumida, Tomomi ; Suzuki, Ryuichiro ; Svensson, Birte ; Taira, Toki ; Taylor, Ed ; Tonozuka, Takashi ; Urbanowicz, Breeanna ; Vaaje-Kolstad, Gustav ; Van den Ende, Wim ; Varrot, Annabelle ; Verluys, Maxime ; Vincent, Florence ; Vocadlo, David ; Wakarchuk, Warren ; Wennekes, Tom ; Williams, Rohan ; Williams, Spencer ; Wilkens, Casper ; Wilson, David ; Withers, Stephen ; Yaoi, Katsuro ; Yip, Vivian ; Zhang, Ran
in: Glycobiology, vol: 28, issue: 1, pages: 3-8

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2018     |    DOI: https://doi.org/10.1093/glycob/cwx089

2017
 

Affinity Electrophoresis for Analysis of Catalytic Module-Carbohydrate Interactions

Cockburn, Darrell ; Wilkens, Casper ; Svensson, Birte
part of: Protein-Carbohydrate Interactions, pages: 119-127, 2017, Springer

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1007/978-1-4939-6899-2_9

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A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community

Herschend, Jakob ; Damholt, Zacharias Brimnes Visby ; Marquard, Andrea Marion ; Svensson, Birte ; Sørensen, Søren J. ; Hägglund, Per ; Burmølle, Mette
in: Scientific Reports, vol: 7, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1038/s41598-017-16633-6

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An extracellular cell-attached pullulanase confers branched α-glucan utilization in human gut Lactobacillus acidophilus

Møller, Marie Sofie ; Goh, Yong Jun ; Rasmussen, Kasper Bøwig ; Cypryk, Wojciech ; Celebioglu, Hasan Ufuk ; Klaenhammer, Todd R ; Svensson, Birte ; Abou Hachem, Maher
in: Applied and Environmental Microbiology, vol: 83, issue: 10

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1128/AEM.00402-17

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Comparative proteomics of oxidative stress response of Lactobacillus acidophilus NCFM reveals effects on DNA repair and cysteine de novo synthesis

Calderini, Elia ; Celebioglu, Hasan Ufuk ; Villarroel, Julia ; Jacobsen, Susanne ; Svensson, Birte ; Pessione, Enrica
in: Proteomics, vol: 17, issue: 5

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1002/pmic.201600178

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Data regarding the growth of Lactobacillus acidophilus NCFM on different carbohydrates and recombinant production of elongation factor G and pyruvate kinase

Celebioglu, Hasan Ufuk ; Olesen, Sita Vaag ; Prehn, Kennie ; Lahtinen, Sampo J ; Pedersen, Susanne Brix ; Abou Hachem, Maher ; Svensson, Birte
in: Data in Brief, vol: 14, pages: 118-122

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1016/j.dib.2017.07.021

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Development of novel monoclonal antibodies against starch and ulvan - Implications for antibody production against polysaccharides with limited immunogenicity

Rydahl, Maja Gro ; Kračun, Stjepan K. ; Fangel, Jonatan U. ; Michel, Gurvan ; Guillouzo, Alexia ; Génicot, Sabine ; Mravec, Jozef ; Harholt, Jesper ; Wilkens, Casper ; Motawia, Mohammed Saddik ; Svensson, Birte ; Tranquet, Olivier ; Ralet, Marie-Christine ; Jørgensen, Bodil ; Domozych, David S. ; Willats, William G. T.
in: Scientific Reports, vol: 7, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1038/s41598-017-04307-2

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Discovery of α-L-arabinopyranosidases from human gut microbiome expands the diversity within glycoside hydrolase family 42

Viborg, Alexander Holm ; Katayama, Takane ; Arakawa, Takatoshi ; Abou Hachem, Maher ; Lo Leggio, Leila ; Kitaoka, Motomitsu ; Svensson, Birte ; Fushinobu, Shinya
in: Journal of Biological Chemistry

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1074/jbc.M117.792598

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Effect of repeat unit structure and molecular mass of lactic acid bacteria hetero-exopolysaccharides on binding to milk proteins

Birch, Johnny ; HarÐarson, HörÐur Kári ; Khan, Sanaullah ; Van Calsteren, Marie-Rose ; Ipsen, Richard ; Garrigues, Christel ; Almdal, Kristoffer ; Abou Hachem, Maher ; Svensson, Birte
in: Carbohydrate Polymers, vol: 177, pages: 406-414

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2017     |    DOI: https://doi.org/10.1016/j.carbpol.2017.08.055