CUPP performs automated clustering of proteins for formation of protein groups and can be used for fast annotation of enzyme protein family, subfamily and EC function of carbohydrate-active enzymes.
The CUPP clustering and CUPP prediction programs can be downloaded from the following link along with a CUPP library of CAZy families:
A new CUPP webserver for CAZyme annotation is available on the following link: cupp.info.
If you have any questions, please contact email@example.com
When using the CUPP programs or results, please cite:
Barrett K, Lange L. Peptide-Based Classification and Functional Annotation of Carbohydrate-Active Enzymes by Conserved Unique Peptide Patterns (CUPP).
Biotechnol Biofuels. BioMed Central; 2019;1–21.